eagle-i Oregon Health & Science UniversityOregon Health & Science University
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eagle-i ID


Resource Type

  1. Software


  1. Resource Description
    "A program for assembling shotgun DNA sequence data. Among other features, it allows use of the entire read and not just the trimmed high quality part, it uses a combination of user-supplied and internally computed data quality information to improve assembly accuracy in the presence of repeats, it constructs the contig sequence as a mosaic of the highest quality read segments rather than a consensus, it provides extensive assembly information to assist in trouble-shooting assembly problems, and it handles large datasets."
  2. Manufacturer
    CodonCode Corporation
  3. Used by
    DNA Sequence Analysis Shared Resource
  4. Operating System
    Berkeley Software Distribution (BSD) Unix
  5. Operating System
    HP-Compaq Tru64 UNIX
  6. Operating System
    Hewlett-Packard HP-UX
  7. Operating System
  8. Operating System
  9. Operating System
    Mac OS X
  10. Operating System
    Microsoft Windows
  11. Operating System
    Oracle Solaris
  12. Operating System
    Silicon Graphics IRIX
  13. Data Input
    DNA sequence data
  14. Software purpose
    Sequence alignment objective
  15. Related Publication or Documentation
    PHRAP Documentation
  16. Website(s)
  17. Related Technique
    DNA sequencing assay
Provenance Metadata About This Resource Record
Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016