Phrap

eagle-i ID

Resource Type

Properties

1. Resource Description

   "A program for assembling shotgun DNA sequence data. Among other features, it allows use of the entire read and not just the trimmed high quality part, it uses a combination of user-supplied and internally computed data quality information to improve assembly accuracy in the presence of repeats, it constructs the contig sequence as a mosaic of the highest quality read segments rather than a consensus, it provides extensive assembly information to assist in trouble-shooting assembly problems, and it handles large datasets."

2. Manufacturer

   CodonCode Corporation

3. Used by

   DNA Sequence Analysis Shared Resource

4. Operating System

   Berkeley Software Distribution (BSD) Unix

5. Operating System

   HP-Compaq Tru64 UNIX

6. Operating System

   Hewlett-Packard HP-UX

7. Operating System

   IBM AIX

8. Operating System

   Linux

9. Operating System

   Mac OS X

10. Operating System

    Microsoft Windows

11. Operating System

    Oracle Solaris

12. Operating System

    Silicon Graphics IRIX

13. Data Input

    DNA sequence data

14. Software purpose

    Sequence alignment objective

15. Related Publication or Documentation

    PHRAP Documentation

16. Website(s)

    http://www.phrap.org/phredphrapconsed.html#block_phrap

17. Related Technique

    DNA sequencing assay