eagle-i Oregon Health & Science UniversityOregon Health & Science University
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Affymetrix Genotyping Console Software

eagle-i ID

http://ohsu.eagle-i.net/i/0000012a-2501-f45f-d994-629180000003

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "GTC Software integrates single nucleotide polymorphism (SNP), copy number polymorphism (CNP) genotyping, rare copy number variation (CNV) identification, and cytogenetic analyses into one application. It generates genotyping calls, copy number calls for CNV regions and individual probe sets, loss of heterozygosity (LOH) data, cluster graphs, and quality control metrics." Macros and scripts are used for preliminary processing for any of the 3 prime arrays.
  2. Additional Name
    GTC
  3. Manufacturer
    Affymetrix, Inc.
  4. Used by
    Gene Profiling Shared Resource Core Laboratory
  5. Website(s)
    http://www.affymetrix.com/products_services/software/specific/genotyping_console_software.affx
  6. Related Technique
    Genotyping assay
  7. Developed by
    Potter, Amiee, Ph.D.
  8. Software license
    Proprietary commercial software license
 
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