Affymetrix Genotyping Console Software

eagle-i ID

Resource Type

Properties

1. Resource Description

   "GTC Software integrates single nucleotide polymorphism (SNP), copy number polymorphism (CNP) genotyping, rare copy number variation (CNV) identification, and cytogenetic analyses into one application. It generates genotyping calls, copy number calls for CNV regions and individual probe sets, loss of heterozygosity (LOH) data, cluster graphs, and quality control metrics." Macros and scripts are used for preliminary processing for any of the 3 prime arrays.

2. Additional Name

   GTC

3. Manufacturer

   Affymetrix, Inc.

4. Used by

   Gene Profiling Shared Resource Core Laboratory

5. Website(s)

   http://www.affymetrix.com/products_services/software/specific/genotyping_console_software.affx

6. Related Technique

   Genotyping assay

7. Developed by

   Potter, Amiee, Ph.D.

8. Software license

   Proprietary commercial software license