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SeqMonk

eagle-i ID

http://ohsu.eagle-i.net/i/0000013d-17ac-ffce-6d01-360380000000

Resource Type

  1. Software

Properties

  1. Resource Description
    "SeqMonk is a program to enable the visualization and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: - Import of mapped data from mapped data (BAM/SAM/bowtie/maq etc) - Creation of data groups for visualisation and analysis - Visualisation of mapped regions against an annotated genome. - Flexible quantitation of the mapped data to allow comparisons between data sets - Statistical analysis of data to find regions of interest - Creation of reports containing data and genome annotation"
  2. Used by
    Massively Parallel Sequencing Shared Resource
  3. Data Input
    Mapped sequence data
  4. Software purpose
    Sequence rendering and visualization objective
  5. Website(s)
    http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/
  6. Related Technique
    Next generation DNA sequencing
  7. Developed by
    Babraham Bioinformatics
 
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Provenance Metadata About This Resource Record

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016