eagle-i Oregon Health & Science UniversityOregon Health & Science University
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Bowtie

eagle-i ID

http://ohsu.eagle-i.net/i/0000013d-17ad-3259-6d01-360380000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end)."
  2. Used by
    Massively Parallel Sequencing Shared Resource
  3. Software purpose
    Sequence alignment objective
  4. Website(s)
    http://bowtie-bio.sourceforge.net/index.shtml
  5. Website(s)
    https://github.com/BenLangmead/bowtie
  6. Related Technique
    DNA sequencing assay
  7. Developed by
    Johns Hopkins University
  8. Algorithm used
    Burrows-Wheeler technique
 
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The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016