Algorithmic software suite
algorithmic software suite
Beyond the bam file: Analysis
http://www.broadinstitute.org/cancer/cga/mutect
Website(s)
has URL
has_url
An analysis pipeline that includes the following components:
muTect: Cancer-specific variant calling
ANNOVAR: Annotate mutation
Breakdancer? Delly?: Structural variant calling
OHSU proprietary pipeline: Copy number analysis
Resource Description
resource_description
Software purpose
Sequence analysis objective
achieves objective
sequence analysis objective
achieves_objective
sequence analysis objective
Genetic variant discovery objective
genetic variant discovery objective
Data Input
has input format
has_input_type
Normal or tumor BAM
sequence data
Normal or tumor BAM
Text file format
Data
data
information content entity
information content entity
molecular data
continuant
entity
generically dependent continuant
Used by
used by
used_by
Paul Spellman Laboratory
Contact
has contact
has_contact
Peto, Myron, Ph.D.
Related Technique
Copy number variation profiling
related technique
copy number variation profiling
related_technique
copy number variation profiling
Next generation DNA sequencing
next generation DNA sequencing
Coded in
is_encoded_in
C++
is_encoded_in
is_encoded_in
Perl
is_encoded_in
2013-08-28T16:47:32.151-05:00
nvasilevsky (Nicole Vasilevsky)
2013-09-13T14:24:56.776-05:00
workflow state
Published
nvasilevsky (Nicole Vasilevsky)
Software
software
software
material_entity
independent_continuant
continuant
entity