eagle-i Oregon Health & Science UniversityOregon Health & Science University
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SAMTools

eagle-i ID

http://ohsu.eagle-i.net/i/0000013e-191d-8a8b-3878-3a7380000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that: is flexible enough to store all the alignment information generated by various alignment programs; is simple enough to be easily generated by alignment programs or converted from existing alignment formats; is compact in file size; allows most of operations on the alignment to work on a stream without loading the whole alignment into memory; allows the file to be indexed by genomic position to efficiently retrieve all reads aligning to a locus."
  2. Used by
    Massively Parallel Sequencing Shared Resource
  3. Software purpose
    Sequence alignment objective
  4. Website(s)
    http://samtools.sourceforge.net/
  5. Related Technique
    Massively Parallel Signature Sequencing
  6. Related Technique
    Sequencing
 
RDFRDF
 
Provenance Metadata About This Resource Record

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016