eagle-i Oregon Health & Science UniversityOregon Health & Science University
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Beyond the bam file: Analysis

eagle-i ID


Resource Type

  1. Algorithmic software suite


  1. Resource Description
    An analysis pipeline that includes the following components: muTect: Cancer-specific variant calling ANNOVAR: Annotate mutation Breakdancer? Delly?: Structural variant calling OHSU proprietary pipeline: Copy number analysis
  2. Contact
    Peto, Myron, Ph.D.
  3. Used by
    Paul Spellman Laboratory
  4. Data Input
    Normal or tumor BAM
  5. Software purpose
    Genetic variant discovery objective
  6. Software purpose
    Sequence analysis objective
  7. Website(s)
  8. Related Technique
    Next generation DNA sequencing
  9. Related Technique
    Copy number variation profiling
  10. Coded in
  11. Coded in
Provenance Metadata About This Resource Record
Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016