eagle-i Oregon Health & Science UniversityOregon Health & Science University
See it in Search
This page is a preview of the following resource. Continue onto eagle-i search using the button on the right to see the full record.

Beyond the bam file: Analysis

eagle-i ID

http://ohsu.eagle-i.net/i/00000140-c6e4-411a-aec5-08d880000000

Resource Type

  1. Algorithmic software suite

Properties

  1. Resource Description
    An analysis pipeline that includes the following components: muTect: Cancer-specific variant calling ANNOVAR: Annotate mutation Breakdancer? Delly?: Structural variant calling OHSU proprietary pipeline: Copy number analysis
  2. Contact
    Peto, Myron, Ph.D.
  3. Used by
    Paul Spellman Laboratory
  4. Data Input
    Normal or tumor BAM
  5. Software purpose
    Genetic variant discovery objective
  6. Software purpose
    Sequence analysis objective
  7. Website(s)
    http://www.broadinstitute.org/cancer/cga/mutect
  8. Related Technique
    Next generation DNA sequencing
  9. Related Technique
    Copy number variation profiling
  10. Coded in
    C++
  11. Coded in
    Perl
 
RDFRDF
 
Provenance Metadata About This Resource Record

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016