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Beyond the bam file: Analysis
eagle-i ID
http://ohsu.eagle-i.net/i/00000140-c6e4-411a-aec5-08d880000000
Resource Type
Properties
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Resource Description
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An analysis pipeline that includes the following components:
muTect: Cancer-specific variant calling
ANNOVAR: Annotate mutation
Breakdancer? Delly?: Structural variant calling
OHSU proprietary pipeline: Copy number analysis
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Contact
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Peto, Myron, Ph.D.
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Used by
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Paul Spellman Laboratory
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Data Input
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Normal or tumor BAM
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Software purpose
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Genetic variant discovery objective
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Software purpose
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Sequence analysis objective
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Website(s)
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http://www.broadinstitute.org/cancer/cga/mutect
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Related Technique
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Next generation DNA sequencing
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Related Technique
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Copy number variation profiling
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Coded in
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C++
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Coded in
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Perl